Nine MSA databases, read without unpacking them

Sequence alignment sample notebook on Scigantic.

399 GiB of HH-suite and MMseqs2 search databases, read in place. Stream thousands of real alignments in seconds, and find a bacterial sequence inside a worm protein.

Figure: Thirty rows of a real protein alignment from the Thal-Kak UniRef100 database, an acyl-CoA dehydrogenase family, drawn as letters, blue where a residue matches the most common residue in its column and grey where it does not

Run it yourself

This sample opens as a hosted JupyterLab notebook with its datasets already mounted, so nothing has to be downloaded first. The notebook arrives with its outputs already rendered, and an AI assistant in the notebook can explain each step or change the analysis. Open the sample or browse the full catalog.